I recently installed new batteries and a Noco Genius Pro 10x3 charger in my boat. I hooked everything up and plug it in. Bank one threw a warning light that was for hooking the battery up using the wrong polarity, but it was hooked up correctly. Two of the batteries are connected in series to give 24 volts for the trolling motor. When I took the jumper cable off, then everything worked correctly.
I called Noco today and explained what happened. Their tech support said it should charge with a bank hooked to each 12V battery even with the two connected in series. He said to switch the batteries on bank 1 and bank 2 and see if bank 1 still said polarity was backwards. He said, if so, then something is wrong with bank 1 of the charger.
He said batteries can sometimes reverse polarity and to test the battery that caused the warning with a voltmeter and if it showed negative voltage, then the battery had reversed polarity; otherwise, something is wrong with bank one of the charger and they would warranty it.
Sound right? I didn't know a battery could reverse polarity. I always assumed batteries had fixed polarity and that the polarity was as marked on the case.
Of course, now I can't find my voltmeter!